Basic Information
VIS ID
TVIS44029352
Fusion event
HTLV-1-MRAP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q22.11
Reference genome
NCBI36/hg18
Start
32588001/32293819 (Hg38)
End
32588001/32293819 (Hg38)
Orient
-
Location type
Intronic
Target gene
MRAP
Nearest miRNA
hsa-let-7c/Upstream/1918441; hsa-mir-3197/Downstream/1256843;
Nearest TSS
ENST00000624081/Upstream/2006; ENST00000303645/Downstream/5031;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/14617, chr21-CpG: 71/Downstream/98885
Upstream sequence
CTTGGGTTACAAATTAAAGGGAGAAGAAAAACAATGCTAACAGTCAAGGACTTTGAGGTATTTGTTAATATAAGTATGTCATTATTATCTTAGAGTTAAC
Downstream sequence
CTTGACAGCAGTGTCACTTCTTACTAATGTCAAAGGGGCAACATTTTTTTAAATTGTTTTTCTACTAGGGGACTTGCATGGATCTTTTTTTTTTTTCTAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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