Basic Information
VIS ID
TVIS44029357
Fusion event
HTLV-1-SLC9A9 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
NCBI36/hg18
Start
144470938/143269406 (Hg38)
End
144470938/143269406 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC9A9
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7g/Upstream/8831500; hsa-mir-1224/Downstream/8296470;
Nearest TSS
ENST00000440867/Upstream/150075; ENST00000479030/Downstream/72840;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/147410, chr3-CpG: 217/Downstream/701485
Upstream sequence
CATAAAAGATTGTATTTTCTTAAAACTGTACACACGCGTAGCTTAAACTGCCAGTAAGTTTTACAAAGATGCAAGAGGTATTTTATAAAATGTTCAGTTA
Downstream sequence
TTTTAGAGCTAGGTAGTGAACATAGATTGTTTTCCAAAATACTTACTTTTTCACTATTCAACAGTCACTTTAAACTTCATACATCAATGGATTTCTATAC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate