VISDB Viral Integration Site DataBase

VIS ID

TVIS44029373

Fusion event

HTLV-1-RAB3IP integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr12

Cytoband

q15

Reference genome

Start

End

68468422/69788375 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-182-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-298 ; hsa-mir-922 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-543 ; hsa-mir-1273e ; hsa-mir-155-5p ; hsa-mir-610 ; hsa-mir-628-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6504-3p ; hsa-mir-449b-3p ; hsa-mir-4438 ; hsa-mir-606 ; hsa-mir-3674 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-3942-3p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-629-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-584-5p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-758-5p ; hsa-mir-218-2-3p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-6740-5p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-643 ; hsa-mir-4687-5p ; hsa-mir-6757-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-1234-3p ; hsa-mir-150-5p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4707-3p ; hsa-mir-4713-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-6778-3p ; hsa-mir-7107-5p ; hsa-mir-93-5p ; hsa-mir-106a-3p ; hsa-mir-1915-3p ; hsa-mir-224-3p ; hsa-mir-3158-3p ; hsa-mir-3190-5p ; hsa-mir-4328 ; hsa-mir-4435 ; hsa-mir-4446-5p ; hsa-mir-4503 ; hsa-mir-4653-3p ; hsa-mir-4694-3p ; hsa-mir-4726-3p ; hsa-mir-4747-3p ; hsa-mir-4747-5p ; hsa-mir-4755-5p ; hsa-mir-4786-3p ; hsa-mir-5006-3p ; hsa-mir-5196-5p ; hsa-mir-522-3p ; hsa-mir-574-5p ; hsa-mir-6510-5p ; hsa-mir-6514-5p ; hsa-mir-671-5p ; hsa-mir-6764-5p ; hsa-mir-6765-3p ; hsa-mir-6792-5p ; hsa-mir-6804-3p ; hsa-mir-6840-3p ; hsa-mir-7977 ; hsa-mir-888-5p

Nearest miRNA

hsa-let-7i/Upstream/203552; hsa-mir-1178/Downstream/9630882;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/48596, chr12-CpG: 102/Downstream/454462

Upstream sequence

gtggtaaaacctagatggtacagcctattacacaccttggctatatgatattgcttattgctcctgggctacaaacctgtacaacatgttactatactga

Downstream sequence

atactgttggcacttgtgatacaatggtaaatatttacgtatctaaacatagaaaaagtaaagtaaaaataaatatggtataattttatgggaccactgt