Basic Information
VIS ID
TVIS44029386
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
NCBI36/hg18
Start
41709050/41470792 (Hg38)
End
41709050/41470792 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12136/Upstream/713420; hsa-mir-101-1/Downstream/1700860;
Nearest TSS
ENST00000473358/Upstream/95123; ENST00000440249/Downstream/13293;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/46838, chr1-CpG: 60/Downstream/25387
Nearby gene
RNA5SP45(-3764) ; EDN2(+7983) ;
Upstream sequence
TATCCCCAAGTGGTGGTAGGAGTGCAAACAAGAGCCCCATTTCTGGCAGGATATTTAATATGTGGTGTcctctgacccagtgatttacctctaacaatct
Downstream sequence
gtcttttctggacaaagatgtataaacaggtgtttaccgcagcatgtttgtaaaaacagtaaatgaagtccatccaaatggcatcagtaggcaaatagtt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate