VISDB Viral Integration Site DataBase

VIS ID

TVIS44029405

Fusion event

HTLV-1-EMC3 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr3

Cytoband

p25.3

Reference genome

Start

End

9990503/9973819 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-26b-5p ; hsa-mir-1277-5p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-190a-3p ; hsa-mir-4653-3p ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1245b-3p ; hsa-mir-6514-5p ; hsa-mir-5011-5p ; hsa-mir-5089-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-186-3p ; hsa-mir-8063 ; hsa-mir-4668-3p ; hsa-mir-6895-5p ; hsa-mir-1972 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4673 ; hsa-mir-4755-3p ; hsa-mir-4645-5p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-5582-5p ; hsa-mir-122-5p ; hsa-mir-1307-3p ; hsa-mir-143-5p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-4423-5p ; hsa-mir-4430 ; hsa-mir-4638-5p ; hsa-mir-4639-3p ; hsa-mir-504-3p ; hsa-mir-564 ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-6501-5p ; hsa-mir-6741-3p ; hsa-mir-6794-3p ; hsa-mir-744-3p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-4790/Upstream/4723564; hsa-let-7g/Downstream/306532;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/21367, chr3-CpG: 42/Downstream/37038

Upstream sequence

GAAAAAGTTCACAATCACTCTGAGCTGTTTTATTTTTAGAATAAGTGTGACTCTTTCTCAGAGGAGGTGGGAACTCTGTGCCACATAGCTTTTGGAAAAC

Downstream sequence

GACTTCCACAAGGAAATCTGTGGCAATTTCTGAAGAAAAGACAGTCAAAATGCCACTCTGCTCTAGTTTCCCTGAATAATATCTGCCTCTAGCTTACTGA