Basic Information
VIS ID
TVIS44029410
Fusion event
HTLV-1-DAPP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
NCBI36/hg18
Start
100979027/99838847 (Hg38)
End
100979027/99838847 (Hg38)
Orient
-
Location type
Intronic
Target gene
DAPP1
Nearest miRNA
hsa-mir-12113/Upstream/841387; hsa-mir-1243/Downstream/1401948;
Nearest TSS
ENST00000502981/Upstream/21997; ENST00000514301/Downstream/26025;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/185350, chr4-CpG: 68/Downstream/107324
Upstream sequence
gctgtagaagattgaaataccttattttggggaattacagcctcacagagccaaaaagaccacatacaagtaacatactacaaagtagaggttgacaaat
Downstream sequence
aacataaaagaaagcaagataagtgtttaggtggttcagaagggaaaaagcagttaacttaagctggaattatcatgtaatacttgacagaggaggtggt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate