Basic Information
VIS ID
TVIS44029413
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
NCBI36/hg18
Start
1081312/1156069 (Hg38)
End
1081312/1156069 (Hg38)
Orient
+
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/523384; hsa-mir-101-1/Downstream/11035;
Nearest TSS
ENST00000473358/Upstream/19052; ENST00000606993/Downstream/13288;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/18602, chr1-CpG: 25/Downstream/1762
Upstream sequence
gcctggggcactctctccctttggccttcaggaccccacactctTCCCATCCAGGAGTCCTGGGATTCCTCAGGGCACCGCCAACCTGACCACAGCCTCC
Downstream sequence
GTTCCCTCGTCATCAGGCGAAGCCAGTGCACTTCCACCCAGGCTCTGCCGGGCGCCGTAACCAGCATGGAGTCCCCACTCGGGAAACTCCCACTCAAACT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate