Basic Information
VIS ID
TVIS44029417
Fusion event
HTLV-1-RWDD4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q35.1
Reference genome
NCBI36/hg18
Start
184816384/183658237 (Hg38)
End
184816384/183658237 (Hg38)
Orient
-
Location type
Intronic
Target gene
RWDD4
Nearest miRNA
hsa-mir-12113/Upstream/1488859; hsa-mir-3945/Downstream/1192776;
Nearest TSS
ENST00000502981/Upstream/2141; ENST00000504526/Downstream/914;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/151762, chr4-CpG: 85/Downstream/531
Upstream sequence
AGAGATTCTATTACATTTATCATGTAAAAGTAGTAAGTTTCAAGCATTATACTTTAAATTAACAGTGAACTTATCTACCACCCAATAagacctggtttct
Downstream sequence
agtcccgattctaccacgtacttactgtgcagccctgcggctatcatcgacccacctatcaaagttagaaggttcccctacagatggcccgtagcaccca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate