Basic Information
VIS ID
TVIS44029425
Fusion event
HTLV-1-SLC26A11 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
75818887/80230493 (Hg38)
End
75818887/80230493 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC26A11
Nearest miRNA
hsa-mir-10226/Upstream/131616; hsa-mir-1250/Downstream/188925;
Nearest TSS
ENST00000595228/Upstream/2641; ENST00000575019/Downstream/17721;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/9338, chr17-CpG: 128/Downstream/29649
Upstream sequence
gtcagaggacaccagggtggccaggaggagaagccaaagctgtggtttaggccacagcctttatcgagattttcttgataaaggcaaggtgaagaaaggc
Downstream sequence
gaccagcttaggacttgcagttggaggaattttggtgggtttcaggcttaaggcagaaaaatcttgcctcctggggtgcaggccaggctggtggaggaag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate