VISDB Viral Integration Site DataBase

VIS ID

TVIS44029427

Fusion event

HTLV-1-DNAJC10 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr2

Cytoband

q32.1

Reference genome

Start

End

183314371/182741399 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-510-3p ; hsa-mir-4709-3p ; hsa-mir-3185 ; hsa-mir-4738-3p ; hsa-mir-4635 ; hsa-mir-6507-5p ; hsa-mir-3149 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-5581-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-1273f ; hsa-mir-6872-3p ; hsa-mir-1306-5p ; hsa-mir-6890-5p ; hsa-mir-7847-3p ; hsa-mir-4531 ; hsa-mir-4764-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-3605-5p ; hsa-mir-539-5p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-1265 ; hsa-mir-5683 ; hsa-mir-3140-3p ; hsa-mir-5089-5p ; hsa-mir-3115 ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-585-3p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-610 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-3622b-5p ; hsa-mir-5000-3p ; hsa-mir-4436a ; hsa-mir-506-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-6807-5p ; hsa-mir-5095 ; hsa-mir-7151-3p ; hsa-mir-4653-3p ; hsa-mir-3934-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-552-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-3915 ; hsa-mir-8053 ; hsa-mir-6717-5p ; hsa-mir-3928-3p ; hsa-mir-935 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-4446-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-642a-5p ; hsa-mir-4775 ; hsa-mir-4254 ; hsa-mir-3690 ; hsa-mir-329-5p ; hsa-mir-590-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-450b-5p ; hsa-mir-548s ; hsa-mir-106a-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3926 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-4716-5p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-670-3p ; hsa-mir-4752 ; hsa-mir-6833-5p ; hsa-mir-644a ; hsa-mir-3190-3p ; hsa-mir-7-5p ; hsa-mir-145-3p ; hsa-mir-4289 ; hsa-mir-4302 ; hsa-mir-1200 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4320 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-4324 ; hsa-mir-544b ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-4668-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4786-5p ; hsa-mir-383-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3714 ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-4746-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-6069 ; hsa-mir-6131 ; hsa-mir-4680-5p ; hsa-mir-3663-5p ; hsa-mir-645 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-574-5p ; hsa-mir-6818-5p ; hsa-mir-6867-5p

Nearest miRNA

hsa-mir-10b/Upstream/1435747; hsa-mir-1244-1/Downstream/1637576;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/24924, chr2-CpG: 38/Downstream/124681

Upstream sequence

TCAAATGATCCTGAGCTGAAAAAACTAAAAACTCTACTTAAAAATGATCATATTCAAGTAAGAAAAATGTATTCTGCCTAGCCTTCTGCTGGTGTACTTT

Downstream sequence

GTTGTTAATTTAATGCatataattaaattttaaataacataaaaaCTCTTATTTGAAATTATAAGAAGCCTATAAGTGCTTTTAGTCTTGGTTTGTGCTT