Basic Information
VIS ID
TVIS44029464
Fusion event
HTLV-1-GSAP integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
NCBI36/hg18
Start
76808362/77341109 (Hg38)
End
76808362/77341109 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
GSAP
Nearest miRNA
hsa-mir-10525/Upstream/1425840; hsa-mir-10399/Downstream/14862906;
Nearest TSS
ENST00000635602/Upstream/9165; ENST00000608884/Downstream/14175;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/219032, chr7-CpG: 111/Downstream/74414
Upstream sequence
ctaagcatcttattttcttgtgtaacaccgcttggccccaatacaaacttgataatggttctaaatagccagaaaacagcacttttgatttctccatttt
Downstream sequence
acaagacccggatgatttttgttgaaaaatgggcaaatgggtctgaggtgcctgacttccaggcattcttctacacattggtccctccctagtctctgct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate