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TVIS44029475
Basic Information
VIS ID
TVIS44029475
Fusion event
HTLV-1-PSD integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q24.32
Reference genome
NCBI36/hg18
Start
104162750/102413003 (Hg38)
End
104162750/102413003 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D
;
FRA10A
;
FRA10B
Target gene
PSD
miRNAs that regulate target gene
hsa-let-7c-3p
;
hsa-mir-181a-2-3p
;
hsa-mir-3922-5p
;
hsa-mir-4708-3p
;
hsa-mir-4718
;
hsa-mir-485-5p
;
hsa-mir-520d-5p
;
hsa-mir-524-5p
;
hsa-mir-6809-5p
;
hsa-mir-6884-5p
Nearest miRNA
hsa-mir-107/Upstream/811506; hsa-mir-1307/Downstream/23509;
Nearest TSS
ENST00000439456/Upstream/1247;
ENST00000481808/Downstream/6141;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/1888
,
chr10-CpG: 79/Downstream/5768
Upstream sequence
AGTCCTTTGTCTCTTAGACTATGGACAAAGCTGGAATAGATGGGCTACCACGGAGGAACTGTGGAGGGCCAGGGAAAGATTTGAGGGCAGCAGGGATACT
Downstream sequence
GGTCCGAAGGCTTTCCCCCTCCTGCTTTTTAGGGAGAGGAACCTCTCCTTGGTGCTCCCCCTCTGCCCACACAGAAGCAGGCTCTGGAGTTAGGGGGTTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co6
Sample type
Nontumor
Age
54
Gender
Female
CpG Island Information
×
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