Basic Information
VIS ID
TVIS44029477
Fusion event
HTLV-1-LOC105374478 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p16.1
Reference genome
NCBI36/hg18
Start
9766283/10155561 (Hg38)
End
9766283/10155561 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4A
Target gene
LOC105374478
Nearest miRNA
hsa-mir-3138/Upstream/76869; hsa-mir-12113/Downstream/1213266;
Nearest TSS
ENST00000502981/Upstream/38612; ENST00000505494/Downstream/301615;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/9854, chr4-CpG: 161/Downstream/300944
Upstream sequence
TTCCTCGTGGTGTTCTGGGGCCTGGAACATGAAAGTGGTCTGCTGAGGTCTGACCACTCCCCTCCGCTTCTCCCTCATCCAGACATCCTCAGAGGGAACT
Downstream sequence
GACTGTTCAGAACCAACAGAATAGTTTTTCATCCCACCTTTCAGAAGTTAGGCTTGAGTGCTTTCCTCCCACTTTTTGGGAGGCATGATGGACTAGCTGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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