Basic Information
VIS ID
TVIS44029510
Fusion event
HTLV-1-LOC388996 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
91154735/91602982 (Hg38)
End
91154735/91602982 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC388996
Nearest miRNA
hsa-mir-1285-2/Upstream/2790528; hsa-mir-10b/Downstream/5195296;
Nearest TSS
ENST00000437798/Upstream/22646; ENST00000514060/Downstream/214789;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/13066, chr2-CpG: 118/Downstream/82039
Upstream sequence
CATCATCCTGGGATGCCTTAAAATTAGATACTTCATTGGATTTTCAGAATGTTTATCAGCCACTGAAGGAGTTTTCCCTGTCACCCATTCAGTGCATACT
Downstream sequence
TTGTTGCAGGTAAACCACTGATGTTTATTCATGTTGTCTCATTCCTGTGGAGTGTATCCCAGGTTGTGTAGAAACTTGTAACATCGAGACATGTGGCAAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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