Basic Information
VIS ID
TVIS44029527
Fusion event
HTLV-1-KCTD8 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
NCBI36/hg18
Start
44102618/44405844 (Hg38)
End
44102618/44405844 (Hg38)
Orient
+
Location type
Intronic
Target gene
KCTD8
Nearest miRNA
hsa-mir-12113/Upstream/3903725; hsa-mir-1243/Downstream/3246825;
Nearest TSS
ENST00000502981/Upstream/388782; ENST00000513775/Downstream/41769;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1748311, chr4-CpG: 174/Downstream/41525
Upstream sequence
TGGTGGTCAATGTTAATTTTTGAATCAATCATCCTCTAGCTATGAGTGTTTTGAGGGCCTTGTCCTGTTTCTCaaaaaaaaaaaaaaaaaaaaaaaaaaG
Downstream sequence
CAATAGTACTGTTTTGTTTATCCTGAAGCATGTCCATGAGCCATTGTTCTAAACAGTTTTAGTTTCAGGGAACTAACAAGAGGAGAAGAAAAGGGTACCC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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