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TVIS44029528
Basic Information
VIS ID
TVIS44029528
Fusion event
HTLV-1-ZNF92 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
NCBI36/hg18
Start
64494757/65392409 (Hg38)
End
64494757/65392409 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
ZNF92
miRNAs that regulate target gene
hsa-mir-361-5p
;
hsa-mir-148a-3p
Nearest miRNA
hsa-mir-1183/Upstream/713233; hsa-mir-10399/Downstream/1721913;
Nearest TSS
ENST00000635602/Upstream/18528;
ENST00000453648/Downstream/70662;
Nearest CpG islands
None/Target,
chr7-CpG: 39/Upstream/18109
,
chr7-CpG: 168/Downstream/116098
Upstream sequence
AAGAGAAACATTTTTGTAATTTGAAGGTAATTTTTGGaaatatttgtaattctattttttttttttttagtttttcttttaaaaaataattgttgtaaaa
Downstream sequence
acacataacctaaaatttaccatcttaaatctatttaagtttacatttcattgccaggcatggtggtggctcacatctgtaatcctcagattttgggagg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co6
Sample type
Nontumor
Age
54
Gender
Female
CpG Island Information
×
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