Basic Information
VIS ID
TVIS44029536
Fusion event
HTLV-1-ABCA13 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
NCBI36/hg18
Start
48586103/48575961 (Hg38)
End
48586103/48575961 (Hg38)
Orient
+
Location type
Intronic
Target gene
ABCA13
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/3694161; hsa-mir-10399/Downstream/8379824;
Nearest TSS
ENST00000635602/Upstream/68089; ENST00000440455/Downstream/87344;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/120805, chr7-CpG: 30/Downstream/271952
Upstream sequence
cccagtactagagagacagtcaggggaccccctacacccatgggttcatatccatggattcaactaactgtgccacaaaatattcagaaaaaaagggatg
Downstream sequence
attctgccggtactgaacatgtacagacttttcctgttgttagtattccctaaaaaatacagcataaccaccgtttatatagcatttacattgcattagg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate