Basic Information
VIS ID
TVIS44029546
Fusion event
HTLV-1-ST3GAL3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
NCBI36/hg18
Start
44038039/43799781 (Hg38)
End
44038039/43799781 (Hg38)
Orient
-
Location type
Intronic
Target gene
ST3GAL3
Nearest miRNA
hsa-mir-12136/Upstream/351170; hsa-mir-101-1/Downstream/38841;
Nearest TSS
ENST00000473358/Upstream/151; ENST00000647299/Downstream/15146;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/91689, chr1-CpG: 35/Downstream/133615
Upstream sequence
aggggacacccaacattcagaccatTTCAGTGAGTATTTATGCCCTATCTATCCCATGAGGTGGTAAGCTCCATGAAGTTTAAGATACAAACTGCAGAGT
Downstream sequence
GAGCCATTTTTTCCCATTTCCTGTACCAGCAGCTGTTTTGACATGCTGTCCCTCCTAATCCTCCTGCAGCTTAGTGCAAGATGCCCTGGGATGGCCCGGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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