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TVIS44029547
Basic Information
VIS ID
TVIS44029547
Fusion event
HTLV-1-IGK integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
NCBI36/hg18
Start
89079077/88998465 (Hg38)
End
89079077/88998465 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
;
FRA2L
Target gene
IGK
Nearest miRNA
hsa-mir-1285-2/Upstream/186011; hsa-mir-10b/Downstream/7799813;
Nearest TSS
ENST00000437798/Upstream/5534;
ENST00000429992/Downstream/12050;
Nearest CpG islands
None/Target,
chr2-CpG: 135/Upstream/232469
,
chr2-CpG: 105/Downstream/612660
Upstream sequence
ctatagtaatacagagaacatgatattgtctatcttaaccatttctaagagtgtagtgcaatgccattaaatatattcacattgctctgctattattact
Downstream sequence
gatactaaatccagaaccattttcatctgaataaaattaatatctatatcctttaaacaatactcccccccatttcctctatccctaccgccagcaacct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co6
Sample type
Nontumor
Age
54
Gender
Female
CpG Island Information
×
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