Basic Information
VIS ID
TVIS44029563
Fusion event
HTLV-1-LINC02539 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
NCBI36/hg18
Start
138095418/137732588 (Hg38)
End
138095418/137732588 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02539
Nearest miRNA
hsa-mir-10398/Upstream/2493332; hsa-mir-1202/Downstream/702625;
Nearest TSS
ENST00000381078/Upstream/39520; ENST00000421450/Downstream/6395;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/234353, chr6-CpG: 82/Downstream/134527
Upstream sequence
ACGGTTTCAATGTAGAAATATGCAAAGTCTAGAAATAGTACAAGAAAAATGAGGCATTAGGGGAGGAGAGGGAGTAAGAAGTGTGgctaaagaaggctcc
Downstream sequence
ttgagaaggcaacgcctgagcagttttgaaagataactaagagctgaacaagCATTTGGGGAAAGCAACAACACTAAAAAAAATTGTAGGTGTTATGTCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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