Basic Information
VIS ID
TVIS44029566
Fusion event
HTLV-1-LCA5 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
NCBI36/hg18
Start
80277320/79510884 (Hg38)
End
80277320/79510884 (Hg38)
Orient
-
Location type
Intronic
Target gene
LCA5
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p ; hsa-mir-132-3p ; hsa-mir-122-5p ; hsa-mir-10a-5p
Nearest miRNA
hsa-mir-10398/Upstream/971575; hsa-mir-1202/Downstream/10801858;
Nearest TSS
ENST00000381078/Upstream/90587; ENST00000607718/Downstream/26524;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/276051, chr6-CpG: 43/Downstream/26308
Upstream sequence
tctacagatggcacataagcacatgaaaagatgttcaacatcattagccattagggaaaggcaaattaaaaccacaatgagatgatgctgcatacctatc
Downstream sequence
aagatggctaaaactttaaaaagtgttaacaccaaatgctggcaaggatgctgagaaactggaccacttatacactactgacgggacaataaaaaatgat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate