Basic Information
VIS ID
TVIS44029570
Fusion event
HTLV-1-LINC02429 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
NCBI36/hg18
Start
59579716/59031403 (Hg38)
End
59579716/59031403 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
LINC02429
Nearest miRNA
hsa-mir-12113/Upstream/6318656; hsa-mir-1243/Downstream/1891216;
Nearest TSS
ENST00000502981/Upstream/17830; ENST00000512546/Downstream/43853;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1835454, chr4-CpG: 222/Downstream/2168762
Upstream sequence
CACATTCTTTAGAATTTTAGTATGTAGTAATATCTGGTAGAGTTAGTACCCTTCCCCCCACTATTGATCTTCTTATTTACACTATTCCTACATACTTGGT
Downstream sequence
tttctgttatgccattttctcttaaccctattccaaataatgttttatctttaccactctaccaaatccgctcttttcaatgccatcaatgtcatctgta
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate