Basic Information
VIS ID
TVIS44029582
Fusion event
HTLV-1-RNASE11 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
NCBI36/hg18
Start
20125421/20587422 (Hg38)
End
20125421/20587422 (Hg38)
Orient
-
Location type
Intronic
Target gene
RNASE11
Nearest miRNA
hsa-mir-1185-1/Downstream/435892;
Nearest TSS
ENST00000550708/Upstream/26491; ENST00000554006/Downstream/222;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/126115, chr14-CpG: 28/Downstream/22294
Upstream sequence
GTTATACTTTTATCTGCAAGATATTTTTAATTAGAAAGGAGGAGCTTCGGTGAAGAAGGGGAGAAAAAGCACTGAAAAGGAAAGAAAAGACAACAAAACC
Downstream sequence
TAGGGAGAGGGATAGAAAAAGGAATCAGAATTCAGAAAATAGATGTAGGAACCTAAAGGATGCATTTCATCCACTTCAAAGTTTTGCCCAAAAAATGATG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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