Basic Information
VIS ID
TVIS44029589
Fusion event
HTLV-1-BTNL9 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
NCBI36/hg18
Start
180401708/181042102 (Hg38)
End
180401708/181042102 (Hg38)
Orient
-
Location type
Intronic
Target gene
BTNL9
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4326 ; hsa-mir-646
Nearest miRNA
hsa-mir-10397/Upstream/1026705; hsa-mir-4638/Downstream/1301;
Nearest TSS
ENST00000502646/Upstream/1830; ENST00000509395/Downstream/10683;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/71539, chr5-CpG: 131/Downstream/10483
Upstream sequence
GACGGAGGGACCGGAAATCAGAAAAACATCAGGGTTGTTTAGGAATTGCAGGTGCAGGAGGAGAGAACAGGAGTGGGGCGGGCTGGGGGCAATGagagag
Downstream sequence
caagaagaaaagaaaaataaaaagagaaggagaagaaagaaaTGGGCTTTTGCTGGGTGCAGGCAGTGACATTTCTCAGGACCCCTTATTTCTCCCTGTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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