Basic Information
VIS ID
TVIS44029598
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
NCBI36/hg18
Start
51525259/51286999 (Hg38)
End
51525259/51286999 (Hg38)
Orient
+
Fragile sites / regions
FRA1B
Nearest miRNA
hsa-mir-12136/Upstream/226896; hsa-mir-101-1/Downstream/549345;
Nearest TSS
ENST00000473358/Upstream/17081; ENST00000568425/Downstream/9861;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/50129, chr1-CpG: 83/Downstream/43223
Nearby gene
TTC39A(+259) ;
Upstream sequence
aagtgtttaaagtagCCTGGacttagctctagctgattgttgcctcatgggaatgaggctcaatgttgccatttttgtttgtttgtttttaaattacagg
Downstream sequence
ccaggaaccagattcatctgtaaaatctccccatttgtgaatgctggtaacttattcaaaaagtttaaaacattgtgtggtctaaataaaacatacatag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate