Basic Information
VIS ID
TVIS44029605
Fusion event
HTLV-1-ADGRA2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
p11.23
Reference genome
NCBI36/hg18
Start
37806130/37829454 (Hg38)
End
37806130/37829454 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADGRA2
miRNAs that regulate target gene
hsa-mir-138-5p
Nearest miRNA
hsa-mir-124-1/Upstream/7872106; hsa-mir-10400/Downstream/3441594;
Nearest TSS
ENST00000518652/Upstream/32198; ENST00000338825/Downstream/20384;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/30872, chr8-CpG: 110/Downstream/11874
Upstream sequence
GGGAGGGGAGGAGAGGGAAGAAGTGCATAGGAAGCAAAATGTGGCCCCCAACCCTTCCACATCCCACCTGCTCTCCTCCGCCGGCCCATGGACACCCTAA
Downstream sequence
GACCCCATCTCAGTTGTCCCCTGTTCCCTGCAGAAACATATCTGGAAACATCTTCTCCAGTCTGCAACCTGGGGTCTTTGATGAGCTGCCAGCCCTTAAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate