Basic Information
VIS ID
TVIS44029606
Fusion event
HTLV-1-ANKRD26 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
27365142/27036207 (Hg38)
End
27365142/27036207 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKRD26
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-4480 ; hsa-mir-4786-3p ; hsa-mir-802 ; hsa-mir-548at-5p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n
Nearest miRNA
hsa-mir-1265/Upstream/2760426; hsa-mir-107/Downstream/1253051;
Nearest TSS
ENST00000439456/Upstream/21528; ENST00000477034/Downstream/10086;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/174907, chr10-CpG: 51/Downstream/63939
Upstream sequence
CCATACACCAACCCATAGTAAGAGCCTTGGCTCTACATATATTTGGACAGACGAAATTTCCTGAAGTTTTTCAAGTTCCTTTTTTCTGAGCATATTCTAT
Downstream sequence
AGATACTCTACTTTTCTCACATCTTTATAGTCAGTTATCAATTacgtttattgatgaataataaatctaggcattgtactaagcacttctacatatatca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate