VISDB Viral Integration Site DataBase

VIS ID

TVIS44029615

Fusion event

HTLV-1-YTHDC1 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr4

Cytoband

q13.2

Reference genome

Start

End

68892547/68344234 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-103a-3p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-20a-3p ; hsa-mir-100-5p ; hsa-let-7b-5p ; hsa-mir-590-3p ; hsa-mir-511-3p ; hsa-mir-607 ; hsa-mir-6715b-3p ; hsa-mir-889-3p ; hsa-mir-5583-3p ; hsa-mir-4517 ; hsa-mir-2681-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-646 ; hsa-mir-4724-5p ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-195-5p ; hsa-mir-107 ; hsa-mir-6738-3p ; hsa-mir-4727-5p ; hsa-mir-5001-3p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-1207-3p ; hsa-mir-95-5p ; hsa-mir-4272 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-143-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6499-3p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-5693 ; hsa-mir-764 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-4733-5p ; hsa-mir-649 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6739-3p ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-6514-3p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-627-3p ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-4781-3p

Nearest miRNA

hsa-mir-12113/Upstream/2067306; hsa-mir-1243/Downstream/8229334;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/161515, chr4-CpG: 52/Downstream/5352

Upstream sequence

GGTTTGTATCTGGTGAATGAGTTTGTATCTGGTGAATCAGTATTACTACCTGAACAAAGAGCATGCTGGCTCTTAAAAAAAAAAAAAAACAAACTCATGA

Downstream sequence

TACCTAACGTATTAAGCAAGTACTTTATCTTTATCTGCCAGATTCTGGCATGCACACACATCTGCAACCCCTGCATAACACTGATCTTAAACTTGAAAAA