Basic Information
VIS ID
TVIS44029620
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
NCBI36/hg18
Start
232689766/234487397 (Hg38)
End
232689766/234487397 (Hg38)
Orient
-
Fragile sites / regions
FRA1H
Nearest miRNA
hsa-mir-101-1/Upstream/180858; hsa-mir-1537/Downstream/702637;
Nearest TSS
ENST00000473358/Upstream/8294; ENST00000429507/Downstream/44368;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8171, chr1-CpG: 62/Downstream/112391
Nearby gene
TARBP1(-8223) ;
Upstream sequence
GGGAAGGAGATTCTTGATAGGCTCTGTCTGAAATTTTTGCCTTCTGATGTTCCCCCGAAAGCCCTCAGAGAACCTCCGTGGAAAAATGCAGCTGCAGAAT
Downstream sequence
CATTAACACGTTTATGTTAAGTGCGATATCTAGAAAACTCAAATTCCCAGTGAGGATCtgtggcagacaccattcattattaaccccacaaccatcctcc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate