VISDB Viral Integration Site DataBase

VIS ID

TVIS44029625

Fusion event

HTLV-1-AGO3 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

36212233/35974045 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-let-7b-5p ; hsa-mir-107 ; hsa-mir-1273e ; hsa-mir-4722-5p ; hsa-mir-6087 ; hsa-mir-4740-3p ; hsa-mir-1827 ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-302f ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6807-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-7106-3p ; hsa-mir-4312 ; hsa-mir-6778-3p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-1273g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-6866-5p ; hsa-mir-877-5p ; hsa-mir-5689 ; hsa-mir-4795-3p ; hsa-mir-4528 ; hsa-mir-126-5p ; hsa-mir-382-3p ; hsa-mir-624-3p ; hsa-mir-410-3p ; hsa-mir-103a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1825 ; hsa-mir-8063 ; hsa-mir-4698 ; hsa-mir-551b-5p ; hsa-mir-548c-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-219b-3p ; hsa-mir-3941 ; hsa-mir-7113-3p ; hsa-mir-6752-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4789-5p ; hsa-mir-6887-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-1178-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-4680-5p ; hsa-mir-767-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-1306-5p ; hsa-mir-4686 ; hsa-mir-6828-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-6793-3p ; hsa-mir-5003-3p ; hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-660-3p ; hsa-mir-106a-3p ; hsa-mir-4634 ; hsa-mir-652-3p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-5007-3p ; hsa-mir-323a-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-4279 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-4715-3p ; hsa-mir-3672 ; hsa-mir-4727-5p ; hsa-mir-6868-3p ; hsa-mir-6794-3p ; hsa-mir-4294 ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-1304-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-4639-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-1295a ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6847-3p ; hsa-mir-4746-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-383-3p ; hsa-mir-4635 ; hsa-mir-122-5p ; hsa-mir-143-5p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-455-3p ; hsa-mir-504-3p

Nearest miRNA

hsa-mir-12136/Upstream/1304351; hsa-mir-101-1/Downstream/1187518;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/42384, chr1-CpG: 39/Downstream/109908

Upstream sequence

aagcttatgtaaaaacagagagagtagtattatgaactaccacataggtagccattactcagattgtcagaatttttctacctttgcgtaatccgagtac

Downstream sequence

atttcttcctctacagtagtgtttttaaatctaattccagacagcatgttattttatccctattacttcaatgtgtacctctaaaactatggatattttc