Basic Information
VIS ID
TVIS44029650
Fusion event
HTLV-1-HMSD integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
q22.1
Reference genome
NCBI36/hg18
Start
59774642/63956428 (Hg38)
End
59774642/63956428 (Hg38)
Orient
+
Location type
Intronic
Target gene
HMSD
Nearest miRNA
hsa-mir-1-2/Upstream/5505270; hsa-mir-5011/Downstream/3125156;
Nearest TSS
ENST00000575820/Upstream/1989; ENST00000498680/Downstream/3754;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/19418, chr18-CpG: 48/Downstream/13763
Upstream sequence
gaggtctaatatccagaatctattaaaaaaaaaacaaacttaaatttacaagcaaaaaccaaacaacacaactccattaaaaagtggccaaaggacatgg
Downstream sequence
acagacacttttcaaaagatgacatatgcgtggccaacaagcctaggaaaacattgccaacatcactaatcattagagaaattcaaatcaaaaccatgat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate