Basic Information
VIS ID
TVIS44029652
Fusion event
HTLV-1-LOC101927400 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
NCBI36/hg18
Start
113849736/113375689 (Hg38)
End
113849736/113375689 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2B
Target gene
LOC101927400
Nearest miRNA
hsa-mir-1285-2/Upstream/1604555; hsa-mir-10b/Downstream/207270;
Nearest TSS
ENST00000437798/Upstream/96739; ENST00000453673/Downstream/30707;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/50491, chr2-CpG: 39/Downstream/61899
Upstream sequence
gtttactcttaatgtacatcctatgagtttggatgtacacgtatttaccttactgtttccttagttttgccttttccagaatatggtatagttgaaatca
Downstream sequence
tatactatgtgctcttttaagactggtttatttcatttaattataggcacttaattttgcttcacatcttttcatggtttgatagctcatttcttttcaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate