Basic Information
VIS ID
TVIS44029653
Fusion event
HTLV-1-LOC101928882 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q26.33
Reference genome
NCBI36/hg18
Start
181936038/180735556 (Hg38)
End
181936038/180735556 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928882
Nearest miRNA
hsa-let-7g/Upstream/4220405; hsa-mir-1224/Downstream/3151244;
Nearest TSS
ENST00000440867/Upstream/55472; ENST00000491674/Downstream/2318;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/55467, chr3-CpG: 54/Downstream/92822
Upstream sequence
AACTTTTAAGCAACTAATCTTAGCAGAAAAAATAGTTTCATAGTAAAGGGATAGTTGGAAAATAATTACTGAAAAACAAAGCAAACCAAAAAACAGAAGG
Downstream sequence
AATGTTACTGCTTCTCTAAATGTTCTCGATGTAAAATTAAATTAAATTTCACCAACAAAAATCCTAATAAACAAATTTGGGAGAAAAAACAGCAAACACT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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