Basic Information
VIS ID
TVIS44029654
Fusion event
HTLV-1-C9orf135 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q21.12
Reference genome
NCBI36/hg18
Start
71667848/69863112 (Hg38)
End
71667848/69863112 (Hg38)
Orient
-
Location type
Intronic
Target gene
C9orf135
Nearest miRNA
hsa-mir-101-2/Upstream/28629277; hsa-let-7a-1/Downstream/946863;
Nearest TSS
ENST00000422679/Upstream/42152; ENST00000460688/Downstream/180469;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/102925, chr9-CpG: 52/Downstream/180808
Upstream sequence
TAGAGAAAAATAAATTGAAGTATAGGGAACAGTTAAGATGACACTATAGTGATATCAAAGACTTAAACTTTAAAAATGAAATTTATAGACTTTGAGTCCC
Downstream sequence
GATTGAGCTTGTCTAGAACCAAAGCTATTGTTTTCCTTGAGAGTTGGTCTCAGTCCCATGAGTGAGTCTCCAAGGAATTGACAGTGGCCTGTGATGGGCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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