Basic Information
VIS ID
TVIS44029669
Fusion event
HTLV-1-TEK integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
p21.2
Reference genome
NCBI36/hg18
Start
27151861/27161863 (Hg38)
End
27151861/27161863 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9C
Target gene
TEK
miRNAs that regulate target gene
hsa-mir-126-3p
Nearest miRNA
hsa-mir-101-2/Upstream/5649678; hsa-let-7a-1/Downstream/1701763;
Nearest TSS
ENST00000422679/Upstream/52410; ENST00000448858/Downstream/134877;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/205091, chr9-CpG: 27/Downstream/366496
Upstream sequence
ctcaggacaagttacttaattgaagtcatattttttcctcatgtgaaaaaaaataaggatagagattttatcacacatatttggaaattaaatgaggcac
Downstream sequence
ttaactattaccaattacattatctgcttcacagtaaatgtttaacaactgatTATTGTAATTTCTTTGAGTAATAGGTGAGATAATTTTCCGACTCAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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