Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene9945178998457077992358629891983698921880989101649891031398954433
Basic Information
VIS ID
TVIS44029671
Fusion event
HTLV-1-HPSE2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
NCBI36/hg18
Start
100704180/98954433 (Hg38)
End
100704180/98954433 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
HPSE2
Nearest miRNA
hsa-mir-107/Upstream/29865; hsa-mir-1307/Downstream/2020552;
Nearest TSS
ENST00000439456/Upstream/210362; ENST00000488090/Downstream/281369;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/486358, chr10-CpG: 46/Downstream/277942
Upstream sequence
GAGCACTAAGTTTGGGGAAGGCTGTAAGCAGGAAAGTGAGGGGAAGTCCTAAAAATCCTCATTCCCTTTTCCATTCTATTGGGAGCCCTAGGACACTGAA
Downstream sequence
CGTGTCACTAAAAATCTTCCTGATTAAATTAACACTTGTGAGAGTTAACACATTAAGAATATTTAAGTTAATGAATGTTCCTTAGTTTTCCATTACTTTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate