Basic Information
VIS ID
TVIS44029698
Fusion event
HTLV-1-CDC27P1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
NCBI36/hg18
Start
132736635/132262592 (Hg38)
End
132736635/132262592 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
CDC27P1
Nearest miRNA
hsa-mir-1285-2/Upstream/5512; hsa-mir-10b/Downstream/171119;
Nearest TSS
ENST00000437798/Upstream/4623; ENST00000622084/Downstream/31785;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/4425, chr2-CpG: 79/Downstream/90151
Upstream sequence
TTCAGAAGGGAAAATATCCACAATCACACCTCAGATTCAGGCTTTTAATCTACAAAAAGCAGCAGCAGAAGGCTTGATGAGCCTTTTTCGTGAAAGGGGG
Downstream sequence
AAAGGTTATTTAGCTTTGTGTTCATACCACTGCAAAGAAGCTATAAATATTTTGAGCCATCTACCTTCTCACCACTACAATACTGGTTGGGTACTATGCC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate