Basic Information
VIS ID
TVIS44029722
Fusion event
HTLV-1-OSMR-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
NCBI36/hg18
Start
38833780/38797921 (Hg38)
End
38833780/38797921 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
OSMR-AS1
Nearest miRNA
hsa-mir-10397/Upstream/240360; hsa-mir-103a-1/Downstream/15153583;
Nearest TSS
ENST00000502646/Upstream/14341; ENST00000502536/Downstream/47842;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/240460, chr5-CpG: 92/Downstream/47479
Upstream sequence
attccaccggtggatggcctgctggtggacggcctgtcggtgtgccaccagcatgctcccctagacgtcctctcgcccaccagcttcatgtgtcttcttc
Downstream sequence
cactgatgtgctcctctcaacgtctggccacctgtgtctgcctgctagggtctcggggtttttataggcacaggatgggggtgtcgcgggccagagtggt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate