Basic Information
VIS ID
TVIS44029729
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
NCBI36/hg18
Start
189689725/191453972 (Hg38)
End
189689725/191453972 (Hg38)
Orient
+
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/11015582; hsa-mir-1182/Downstream/1262356;
Nearest TSS
ENST00000473358/Upstream/225505; ENST00000430776/Downstream/412988;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4773023, chr1-CpG: 56/Downstream/1354530
Upstream sequence
agaattttgcttttaatccacccaaatctcaACATATGTCTACCATTCATATAACTGTAAAAATCACATACAATATTATTTAACAAACATTTATAGGTAT
Downstream sequence
ATACTAGTGACAAAAGAGCAATGATCACTGACTTGTTGAGGCATACATTTTATCCATCTTCCTATTTCTATCTATATTACACATATTTTACATATTTGTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate