Basic Information
VIS ID
TVIS44029734
Fusion event
HTLV-1-LOC101928278 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
NCBI36/hg18
Start
217424231/216851263 (Hg38)
End
217424231/216851263 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928278
Nearest miRNA
hsa-mir-10b/Upstream/3093104; hsa-mir-1244-1/Downstream/1049250;
Nearest TSS
ENST00000437798/Upstream/51655; ENST00000451711/Downstream/3869;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/40772, chr2-CpG: 23/Downstream/905293
Upstream sequence
ccttggaaacatttctcatctctaaaatacagatcatcataatatctacttcatgggactgtgatgagagtgaaagaagttaatacacataacactctta
Downstream sequence
ggagagtgtctggtgtaggtgttttacgagtattgctgtcattattCTCCTTAAATGTGTAATTAATGAAATTCTAGTATTTTCAAATAAATATATGGGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate