Basic Information
VIS ID
TVIS44029737
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
NCBI36/hg18
Start
237238653/239008730 (Hg38)
End
237238653/239008730 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/1537539; hsa-mir-3123/Downstream/2123542;
Nearest TSS
ENST00000473358/Upstream/522707; ENST00000481779/Downstream/242088;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1224582, chr1-CpG: 91/Downstream/378225
Upstream sequence
AACTAGTAGAATTATTGAGGCAAAAGAAATCTGTTATAAGCTGAGGttaaaaataaatgtaacatttatttttaaataattGTCAGACAAAAGTAGATAC
Downstream sequence
CAGTAGACCTATCCTAAATCAAATAAGTACTATCAGGATAGACTATAATATTAGTACATATGTAAAAATTTCTCCTAGTGGAGAAGTAAGGTATTTGCCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate