Basic Information
VIS ID
TVIS44029742
Fusion event
HTLV-1-C1orf194 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
NCBI36/hg18
Start
109454718/109110573 (Hg38)
End
109454718/109110573 (Hg38)
Orient
-
Location type
Intronic
Target gene
C1orf194
Nearest miRNA
hsa-mir-101-1/Upstream/1213269; hsa-mir-11399/Downstream/488320;
Nearest TSS
ENST00000473358/Upstream/10380; ENST00000533147/Downstream/2174;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/9811, chr1-CpG: 18/Downstream/2900
Upstream sequence
ccataatgctgattccctcaaatgccctcaccaagctctgtgggcccagctcctctgggttttcctcttatttctggcccttatctctcagctactgtct
Downstream sequence
cagctccactttctctctgtcccttaggcagtgctattctccaagggtctcatttttacttttcttatgctcacatccactggatgagctgattcccttc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate