Basic Information
VIS ID
TVIS44029770
Fusion event
HTLV-1-CNTN3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
NCBI36/hg18
Start
74626178/74494337 (Hg38)
End
74626178/74494337 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTN3
Nearest miRNA
hsa-let-7g/Upstream/2952248; hsa-mir-12124/Downstream/720139;
Nearest TSS
ENST00000440867/Upstream/226798; ENST00000608707/Downstream/26803;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/869113, chr3-CpG: 86/Downstream/120018
Upstream sequence
TTAGCTTGTGTTTGATCAATACGTGTACATCCATTCCCCTTGCCCCACTGAAAAAACACAAGAAAGAGAAACAAAAAAAGGATATGATTTATTTTGTTAT
Downstream sequence
ACTATCACCTTTAATATCTAAAATCTAACCTTTATGTCTCTGCTGGGTATTGACTACTGACAGGATTAGCTTCATTTTTATTTCACATTTTTCTGACACC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate