Basic Information
VIS ID
TVIS44029777
Fusion event
HTLV-1-GALNT16 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
68896662/69360192 (Hg38)
End
68896662/69360192 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA14C
Target gene
GALNT16
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-140-5p
Nearest miRNA
hsa-mir-208a/Upstream/1918262; hsa-mir-1185-1/Downstream/3156628;
Nearest TSS
ENST00000550708/Upstream/8163; ENST00000554059/Downstream/34734;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/98516, chr14-CpG: 44/Downstream/37804
Upstream sequence
ctagaatcccagcactttgggaggctaaggtaggaggaccacttgaactcaggagtttgaaaccagcctgggcaaaatagtgagacctcatctatactat
Downstream sequence
aaatttaaaaattagccaggtgtggtggtgcatgcctgtagtcccagctactcagaaggctgaggcgggaggatcacttgatcccaggaggttgaggctg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate