Basic Information
VIS ID
TVIS44029786
Fusion event
HTLV-1-ACYP2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p16.2
Reference genome
NCBI36/hg18
Start
54134077/54053436 (Hg38)
End
54134077/54053436 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2D ; FRA2H
Target gene
ACYP2
Nearest miRNA
hsa-mir-1301/Upstream/204231; hsa-mir-10b/Downstream/1929531;
Nearest TSS
ENST00000437798/Upstream/82328; ENST00000606436/Downstream/29118;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/82083, chr2-CpG: 47/Downstream/62061
Upstream sequence
CTAGCCCAAGTCATATGCAGAGGTGCACTCGGTTGCTGTGGAAGGCCTCCCCAGCTCTCAGTCCCACCAGCACCCTCAGTGGCAGCCCAACTCACTCTGC
Downstream sequence
ACACCCACCCATCAAGTTCAGCTTTCCTGGGTCCTAGATATCCTGACACAGACACTGTGTGTTCCAGGCCTCACACCTACAGTGGCTCTGTGACTCTCTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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