Basic Information
VIS ID
TVIS44029800
Fusion event
HTLV-1-LOC105378484 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q25.2
Reference genome
NCBI36/hg18
Start
113156997/111407249 (Hg38)
End
113156997/111407249 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
LOC105378484
Nearest miRNA
hsa-mir-107/Upstream/418236; hsa-mir-202/Downstream/892363;
Nearest TSS
ENST00000439456/Upstream/55146; ENST00000643850/Downstream/776461;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/327704, chr10-CpG: 35/Downstream/776276
Upstream sequence
agatcacttgaggtcaggagtctaagaccagcctggccaacatggtgaaaccctgctgctactaaaaatacaaaattaactggttgtggtggtgcatgcc
Downstream sequence
tgtagtccaagctattcgggaagctgaggcaggagaatcgcttaaacctaggaggcagaggctgcagtgagctgagatcgcatcattgcactccagcctg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate