Basic Information
VIS ID
TVIS44029811
Fusion event
HTLV-1-NALCN-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q32.3
Reference genome
NCBI36/hg18
Start
100235671/100785416 (Hg38)
End
100235671/100785416 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13D
Target gene
NALCN-AS1
Nearest miRNA
hsa-mir-1297/Upstream/1142267; hsa-mir-1267/Downstream/1182226;
Nearest TSS
ENST00000623511/Upstream/77091; ENST00000474233/Downstream/158948;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/109947, chr13-CpG: 117/Downstream/630349
Upstream sequence
acctcccaaagtgctgggattacagctgtaagccaccatgcccagcctgccaatattttctcctactctgtgggttgaattttcactttcttggtggtat
Downstream sequence
tttttgaagcacaaaagttttacattttgatcaactccaatgtactctttttttcttctgtcacttgtgctttttggtgtcatatctaagaaaccattgt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate