Basic Information
VIS ID
TVIS44029825
Fusion event
HTLV-1-LOC107984728 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
71489582/73410188 (Hg38)
End
71489582/73410188 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984728
Nearest miRNA
hsa-mir-10393/Upstream/110209; hsa-mir-11181/Downstream/1001169;
Nearest TSS
ENST00000557528/Upstream/40924; ENST00000560581/Downstream/32970;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/40514, chr15-CpG: 21/Downstream/32793
Upstream sequence
attacatccctttccgcataaaataattagagtgatttctgcttacttcagtaaactgattgatgcaTCTATCCTCTGCTGGGTCACCTAAATAGATAAC
Downstream sequence
AGTTTGCCCAGGAGGGAATTCAGTTTCGGTTCAGGTCAACCCAGTTAGTACTGACCTCCACTATATGCCTAGTTCATTTTCTAGGCTTTTGCCTTCAGGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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