Basic Information
VIS ID
TVIS44029853
Fusion event
HTLV-1-NIPSNAP3B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
106568930/104766828 (Hg38)
End
106568930/104766828 (Hg38)
Orient
-
Location type
Intronic
Target gene
NIPSNAP3B
Nearest miRNA
hsa-let-7a-1/Upstream/6537611; hsa-mir-12126/Downstream/1834100;
Nearest TSS
ENST00000422679/Upstream/2633; ENST00000435915/Downstream/64161;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2330, chr9-CpG: 23/Downstream/159660
Upstream sequence
TCTTATGTTATCATAAATGAGAAAACATGCAGTCTCATATATCAAACCATAAAATTGTGAATTAGACTTTAATCCTCAGAAAAATGTTAGAATCGTTTGC
Downstream sequence
TATAAAGATAGCTCATGAAAAATTTAAAGCAGTAATTGTAAATGTTCAAGTGGGTTAAGATCACCGTTGGGCCTGCCAAAAGACATGTATATTTAATAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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