Basic Information
VIS ID
TVIS44029859
Fusion event
HTLV-1-LOC105378519 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q26.12
Reference genome
NCBI36/hg18
Start
122727303/120977800 (Hg38)
End
122727303/120977800 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
LOC105378519
Nearest miRNA
hsa-mir-107/Upstream/1019208; hsa-mir-202/Downstream/1439165;
Nearest TSS
ENST00000439456/Upstream/70505; ENST00000429809/Downstream/2900;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/28414, chr10-CpG: 39/Downstream/1739
Upstream sequence
GGAGCACTGGCTTTTATTCTGGGATCATTGCTCTCTGCCATCCTTCCCAATCCATTGCTCTCCATTTGTCCACCCACCGCTAAATCTTCACCTCCTAAAC
Downstream sequence
CAGTTCTATTTGGACTGGCCATCAGCCCAATCCATACAACCTTCCTTCCCTTCTCTCCTCTCGCACTTGGGCCTCTCACCTTGGCTTTACTTTGGAGAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate